TractoFlow is our
recommended processing pipeline, starting from raw DWI up to the generation of whole brain
tractograms. It is robust, efficient and fully reproducible, leveraging the
Nextflow pipeline engine and the
Singularity container system.
Scilpy is a lightweight
Diffusion Imaging processing library developed for the needs of members
and collaborators of the SCIL. It mainly contains wrappers for
DIPY functionalities, as well as tools not
already integrated into Dipy.
The SCIL distributes a few containers that can be used to run the
as well as easily interact with various diffusion MRI focused tools. See the
containers list for downloads.
The SCIL has contributed to, and highly recommends,
MI-Brain as a visualization and
interaction tool for Diffusion MRI and neuroimaging datasets.
The Tractometer is our online
evaluation system for tractography. It has been used in various challenges. Code of the
ISMRM 2015 tractography challenge can be seen